CLC Microbial
Genomics Module

CLC Microbial Genomics Module empowers microbiologists to take full advantage of whole genome or metagenomic data. Uncover and compare the taxonomic and functional composition of microbial communities, or use the pathogen typing functionality to confirm the identity and characteristics of pathogens. Investigators can study outbreak trees in the context of epidemiological sample information, where pathogen information, data, and results can all be managed from one convenient Outbreak Dashboard.

CLC Microbial Genomics Module comes readily included in the
Microbial Genomics Pro Suite 

 





System requirements

  • Windows 7, Windows 8, Windows 10 or Windows Server 2012.
  • Mac OS X 10.9, 10.10, 10.11 and 10.12.
  • Linux: RHEL 6.0 and later, Suse 13.1 and later. (The software is expected to run without problem on other recent Linux systems, but we do not guarantee this.)
  • 64 bit operating system
  • 2 GB RAM required
  • 4 GB RAM recommended
  • 1024 x 768 display required
  • 1600 x 1200 display recommended
  • Intel or AMD CPU required

Special requirements for the Taxonomic Profiler.
Running the Taxonomic Profiler with a 14 GB database requires a minimum 16 GB RAM, and running with a 56 GB database requires a minimum of 64 GB RAM. When creating your reference database with the Create Microbial Reference Database tool, you will get a warning about the memory requirements needed for running the Taxonomic Profiler with this database.

Special requirements for De Novo Assemble Metagenome. It is recommended to have at least 16 GB RAM when running the De Novo Assemble Metagenome.

Special requirements for the PCoA 3D Viewer.

  • A graphics card capable of supporting OpenGL 2.0.
  • Updated graphics drivers. Please make sure the latest driver for the graphics card is installed
  • Indirect rendering (such as x11 forwarding through ssh), remote desktop connection/VNC, and running in virtual machines is not supported.
  • Recommended: A discrete graphics card from either Nvidia or AMD/ATI. Modern integrated graphics cards (such as the Intel HD Graphics series) may also be used, but these are usually slower than the discrete cards.

We frequently release updates and improvements such as new functionalities, bug fixes or plugins. To get a complete overview, please read the latest improvements.


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