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CLC Genomics Workbench 12

Featuring improved NGS read handling and integrated biomedical workbench capabilities

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A Genomics Workbench
that works for everyone

CLC Genomics Workbench is a powerful solution that
works for everyone, no matter the workflow.
Utilizing cutting-edge technology, unique features and
algorithms widely used by scientific leaders in industry
and academia to overcome challenges associated
with data analysis.


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Complete toolkit for genomics, transcriptomics, epigenomics, and metagenomics in one program


Comprehensive NGS data analysis

User-friendly bioinformatics software solutions allow for comprehensive analysis of your NGS data, including whole genome and transcriptome de novo assembly, targeted resequencing analysis, variant calling, ChIP-seq and DNA methylation (bisulfite sequencing analysis).

Uncover critical correlations between microbiota, its metagenome, and host. Making sense of complex metagenomic data becomes easy through tools and streamlined analysis workflows for taxonomic and functional microbiome analysis.

Supported NGS platforms are Illumina, IonTorrent, PacBio and GeneReader.

RNA-seq and small RNA (miRNA, lncRNA) transcriptomics workflows for differential expression analysis at gene and transcript levels.


New: Biomedical Genomics Analysis 1.0

Installing this plugin on a CLC Genomics Workbench provides the functionality formerly available by running a Biomedical Genomics Workbench and installing the now-retired plugin, QIAseq Targeted Panel Analysis. Get access to biomedical ready-to-use workflows, QIAseq analysis tools and workflows, or the GeneRead analysis tools and workflows.

Biomedical workflows for human, mouse and rat genomics include Hereditary disease workflows (trio analysis) and oncology somatic mutation detection workflows for FFPE or liquid biopsy (single sample or tumor-normal matched samples) and include sensitive detection of SNPs, MNVs, InDels, Tandem Repeats, Structural Variants, Fusion Genes and CNVs. Annotation with conservation scores and filtering steps on dbSNP, ClinVar are included. Get the Plugin.




Uncover the signals that lead to breakthrough discoveries in your human disease research

Biomedical genomics analysis and panel data analysis functionality is now delivered through the CLC Genomics Workbench and the free plugin, Biomedical Genomics Analysis. Together, these replace the Biomedical Genomics Workbench, and the plugins QIAseq Targeted Panel Analysis and QIAGEN GeneRead Panel Analysis Plugin.

Ready-to-use Workflows

Get access to ready-to-use workflows through the Biomedical Genomics Analysis plugin.

Ready-to-Use workflows familiar to existing Biomedical Genomics Workbench users have been improved and updated. They are now available to all users in the CLC Genomics Workbench 12 release.

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Download and install CLC Genomics Workbench

Enjoy a FREE full-feature trial for 14 days

CLC Genomics Workbench is developed for Windows, Mac and Linux. Download now to start your data analysis. To get started follow the step by step instructions in the user-friendly manual or watch the tutorials in our resources guide.



Lead Your Own Discovery

Modify workflows and discovery parameters for hypothesis-led analysis that guides you to the most promising breakthroughs.

Discover More, Faster

Simplicity, flexibility, and accuracy combine to provide you with a solution that is more than 50% faster than open-source alternatives with the added benefit of being fully supported.

Customized workflows to accelerate your data analysis

CLC Genomics Workbench is developed to support a wide range of NGS bioinformatics applications. Workflows can combine quality control steps, adapter trimming, read mapping, variant detection, and multiple filtering and annotation steps into a pipeline you can share with colleagues and execute with just one click.


From sample to insight with QIAGEN Bioinformatics

System requirements

The CLC Genomics Workbench system requirements are available on our general system requirements page and also in the user manual.

Latest improvements

We frequently release updates and improvements such as new functionalities, bug fixes or plugins. To get a complete overview, please read the latest improvements.