PPfold

PPfold is a program to predict the consensus secondary structure of RNA alignments. It is a multithreaded and improved version of the popular pfold program.

The PPfold plugin enables the use of PPfold inside the CLC workbenches.

 

Key features

  • Predict the consensus secondary structure of RNA sequences and alignments
  • Produce dotplots of basepairing probabilities
  • Export sequences and alignments in various structure formats

See also: [Sukosd et al, 2011]

 

Downloads


Plugin Manual

Download manual

Plugin Downloads

Download plugin

Download PPfold


Version

Platform support

Download

3.6.0

CLC Drug Discovery Workbench


 [3.0]

CLC Genomics Workbench


 [9.5.2, 9.5.1, 9.5, 9.0.1, 9.0]

CLC Main Workbench


 [7.7.3, 7.7.2, 7.7.1, 7.7]

CLC Sequence Viewer


 [7.7.1, 7.7]

3.5.1

CLC Drug Discovery Workbench


 [2.5, 2.4.1, 2.4, 2.0]

CLC Genomics Workbench


 [8.5.3, 8.5.2, 8.5.1, 8.5, 8.0.3, 8.0.2, 8.0.1, 8.0]

CLC Main Workbench


 [7.6.6, 7.6.5, 7.6.4, 7.6.3, 7.6.2, 7.6.1, 7.6]

CLC Sequence Viewer


 [7.6.1, 7.6]

3.5

CLC Drug Discovery Workbench


 [1.5.1, 1.5]

CLC Genomics Workbench


 [7.5.5, 7.5.4, 7.5.3, 7.5.2, 7.5.1, 7.5]

CLC Main Workbench


 [7.5.3, 7.5.2, 7.5.1, 7.5]

CLC Sequence Viewer


 [7.5]

3.3

CLC Drug Discovery Workbench


 [1.0.2, 1.0.1, 1.0]

CLC Genomics Workbench


 [7.0.4, 7.0.3, 7.0.2, 7.0.1, 7.0]

CLC Main Workbench


 [7.0.3, 7.0.2, 7.0.1, 7.0]

3.2

CLC Genomics Workbench


 [6.5.2, 6.5.1, 6.5]

CLC Main Workbench


 [6.9.2, 6.9.1, 6.9]

3.1.0

CLC Genomics Workbench


 [6.0.5, 6.0.4, 6.0.3, 6.0.2, 6.0.1, 6.0]

CLC Main Workbench


 [6.8.4, 6.8.3, 6.8.2, 6.8.1, 6.8]

CLC Sequence Viewer


 [6.8.2, 6.8.1, 6.8]

Step 1 - About you

Step 2 - Organizational details

© QIAGEN 2016. All rights reserved - Trademarks & Disclaimers