Ingenuity Pathway Analysis plugin

The Ingenuity Pathway Analysis plugin allows you to upload genes and expression data directly from a Workbench to Ingenuity Pathway Analysis (IPA) for downstream biological interpretation.

IPA is a solution that helps researchers model, analyze, and understand complex biological systems by linking incoming data with known information regarding molecular interactions, cellular phenotypes, and disease processes.

The IPA plugin allows direct upload of one or more genes of interest from your CLC Genomics Workbench or Biomedical Genomics Workbench analysis, or upload of entire datasets from RNA-seq samples, such as the expression levels of all transcripts.

In addition, differential expression results from either microarray data or RNA-seq data can be uploaded from our analysis solutions to IPA.

All or filtered results of the most interesting genes can be uploaded, and you can now study up- and downregulation of genes in pathway view in IPA, and identify the most prominent biological processes involved in your experiment, as well as have access to associated literature.

 

Biological insights

Analyze and interpret to generate biological insights:

  • Canonical Pathways
  • Biological Functions
  • Networks
  • Mechanical Hypotheses
  • Therapeutics
  • Biomarkers
  • Disease mechanisms

For more information, please visit Ingenuity Pathway Analysis (IPA).

We frequently release updates and improvements such as bug fixes or new features. To get a complete overview, please visit latest improvements.

Sceenshots

Downloads


Plugin Manual

Download manual

Plugin Downloads

Download plugin

Download Ingenuity Pathway Analysis


Version

Platform support

Download

2.1.0

Biomedical Genomics Workbench


 [3.5, 3.0.1, 3.0]

CLC Genomics Workbench


 [9.5, 9.0.1, 9.0]

2.0.5

Biomedical Genomics Workbench


 [2.5.3, 2.5.2, 2.5.1, 2.5, 2.1.2, 2.1.1, 2.1]

CLC Genomics Workbench


 [8.5.3, 8.5.2, 8.5.1, 8.5, 8.0.3, 8.0.2, 8.0.1, 8.0]

2.0.4

CLC Genomics Workbench


 [7.5.5, 7.5.4, 7.5.3, 7.5.2, 7.5.1, 7.5]

2.0.3

CLC Genomics Workbench


 [7.0.4, 7.0.3]

Server plugin Downloads

Download plugin

Download Ingenuity Pathway Analysis Server Plugin


Version

Platform support

Download

2.1.0

Biomedical Genomics Server Solution


 [8.0.1, 8.0]

CLC Genomics Server


 [8.5, 8.0.1, 8.0]

2.0.5

Biomedical Genomics Server Solution


 [7.5.3, 7.5.2, 7.5.1, 7.5, 7.0.3, 7.0.2, 7.0.1, 7.0]

CLC Genomics Server


 [7.5.3, 7.5.2, 7.5.1, 7.5, 7.0.3, 7.0.2, 7.0.1, 7.0]

2.0.4

Biomedical Genomics Server Solution


 [6.5.6, 6.5.5, 6.5.4, 6.5.3, 6.5.2, 6.5.1, 6.5]

CLC Genomics Server


 [6.5.6, 6.5.5, 6.5.4, 6.5.3, 6.5.2, 6.5.1, 6.5]

2.0.3

Biomedical Genomics Server Solution


 [6.0.5, 6.0.4, 6.0.3, 6.0.2]

CLC Genomics Server


 [6.0.5, 6.0.4, 6.0.3, 6.0.2]

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Step 2 - Organizational details

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