You can choose different ways of changing the name:
In addition, you can choose the level of the rename. For a single sequence, this is straightforward because it has just one name, and you would use the Rename elements. But if you have a sequence list, for example, you could choose either to rename the list (using Rename elements) or the sequences in the list (using Rename sequences in sequence lists).
The same goes for alignments (using Rename sequences in alignments) and read mappings (using Rename reads in read mappings). For read mappings, there is also an option to Rename reference sequence.
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