Annotate with GFF File

The Annotate Sequence with GFF File plugin makes it very easy to annotate a sequence with annotations from a GFF file (Generic Feature Format).

A GFF file does not contain any sequence information, it only contains a list of annotations. You can read more about the format at http://www.sanger.ac.uk/Software/formats/GFF.

You can also use GTF files (Gene Transfer Format). This format is used by among others the UCSC Genome Browser. If you download an annotation track (e.g. SNPs or repeats) you can get this as a GTF file.

Note! GTF-files downloaded from the UCSC genome browser are not compatible with the RNA-seq analysis of CLC Genomics Workbench because the gene and transcript annotations cannot be matched. See examples and guides, and read more about the plugin in the user manual.

Downloads


Plugin Manual

Download manual

Plugin Downloads

Download plugin

Download Annotate with GFF file


Version

Platform support

Download

2.3.0

CLC Genomics Workbench


 [9.5, 9.0.1, 9.0]

CLC Main Workbench


 [7.7.2, 7.7.1, 7.7]

2.2.8

CLC Genomics Workbench


 [8.5.3, 8.5.2, 8.5.1, 8.5, 8.0.3, 8.0.2, 8.0.1, 8.0]

CLC Main Workbench


 [7.6.6, 7.6.5, 7.6.4, 7.6.3, 7.6.2, 7.6.1, 7.6]

2.2.7

CLC Genomics Workbench


 [7.5.5, 7.5.4, 7.5.3, 7.5.2, 7.5.1, 7.5]

CLC Main Workbench


 [7.5.3, 7.5.2, 7.5.1, 7.5]

2.2.6

CLC Genomics Workbench


 [7.0.4, 7.0.3, 7.0]

CLC Main Workbench


 [7.0.3, 7.0.2, 7.0]

2.2.5

CLC Genomics Workbench


 [6.5.2, 6.5.1]

CLC Main Workbench


 [6.9.2, 6.9.1]

2.2.4

CLC Genomics Workbench


 [6.5]

CLC Main Workbench


 [6.9]

Server plugin Downloads

Download plugin

Download Annotate with GFF file server plugin


Version

Platform support

Download

2.3.0

Biomedical Genomics Server Solution


 [8.5, 8.0.1, 8.0]

CLC Genomics Server


 [8.5, 8.0.1, 8.0]

2.2.8

Biomedical Genomics Server Solution


 [7.5.3, 7.5.2, 7.5.1, 7.5, 7.0.3, 7.0.2, 7.0.1, 7.0]

CLC Genomics Server


 [7.5.3, 7.5.2, 7.5.1, 7.5, 7.0.3, 7.0.2, 7.0.1, 7.0]

2.2.7

Biomedical Genomics Server Solution


 [6.5.6, 6.5.5, 6.5.4, 6.5.3, 6.5.2, 6.5.1, 6.5]

CLC Genomics Server


 [6.5.6, 6.5.5, 6.5.4, 6.5.3, 6.5.2, 6.5.1, 6.5]

2.2.6

Biomedical Genomics Server Solution


 [6.0.5, 6.0.4, 6.0.3, 6.0.2, 6.0]

CLC Genomics Server


 [6.0.5, 6.0.4, 6.0.3, 6.0.2, 6.0]

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