Advanced Peak Shape Tools (Beta)

A beta version of the new ChIP-seq analysis tool using a method based on peak shape to accurately detect peaks in ChIP-seq data.

Introduction

The Advanced Peak Shape Tools plugin provides advanced tools to manipulate peak shapes and find regions in sequencing data that exhibit a distinct shape. These tools can be used to interactively refine the results of ChIP-seq analysis or to perform shape-based analyses of sequencing data.

The Learn Peak Shape Filter tool creates a new peak shape filter from sequencing data and a set of positive and negative regions. The Apply Peak Shape Filter then applies a peak shape filter to sequencing data to discover regions (peaks), which match a given peak shape. The Score Regions tool scores genomic regions according to how well they match a given peak shape.

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Downloads


Plugin Manual

Download manual

Plugin Download

Download plugin

Download Advanced Peak Shape Tools Plugin


Version

Platform support

Download

1.0.0

CLC Genomics Workbench


 [12.0]

1.0.0 Beta v.8

Biomedical Genomics Workbench


 [5.0.2, 5.0.1, 5.0.0]

CLC Genomics Workbench


 [11.0.2, 11.0.1, 11.0.0]

1.0.0 Beta v.7

Biomedical Genomics Workbench


 [4.1.3, 4.1.2, 4.1.1, 4.1.0, 4.0]

CLC Genomics Workbench


 [10.1.3, 10.1.2, 10.1.1, 10.1.0, 10.0.1, 10.0]

1.0.0 Beta v.6

Biomedical Genomics Workbench


 [3.5.4, 3.5.3, 3.5.2, 3.5.1, 3.5, 3.0.1, 3.0]

CLC Genomics Workbench


 [9.5.4, 9.5.3, 9.5.2, 9.5.1, 9.5, 9.0.1, 9.0]

1 Beta v.5

Biomedical Genomics Workbench


 [2.5.4, 2.5.3, 2.5.2, 2.5.1, 2.5, 2.1.2, 2.1.1, 2.1]

CLC Genomics Workbench


 [8.5.4, 8.5.3, 8.5.2, 8.5.1, 8.5, 8.0.3, 8.0.2, 8.0.1, 8.0]

1 Beta v.4

CLC Genomics Workbench


 [7.5.5, 7.5.4, 7.5.3, 7.5.2, 7.5.1, 7.5]

Server plugin Downloads

Download plugin

Download Advanced Peak Shape Tools Server Plugin


Version

Platform support

Download

1.0.0

CLC Genomics Server


 [11.0]

1.0.0 Beta v.8

Biomedical Genomics Server Solution


 [10.0.2, 10.0.1, 10.0]

CLC Genomics Server


 [10.0.2, 10.0.1, 10.0.0]

1.0.0 Beta v.7

Biomedical Genomics Server Solution


 [9.1.3, 9.1.2, 9.1.1, 9.1, 9.0]

CLC Genomics Server


 [9.1.3, 9.1.2, 9.1.1, 9.1.0, 9.0]

1.0.0 Beta v.6

Biomedical Genomics Server Solution


 [8.5.4, 8.5.3, 8.5.2, 8.5.1, 8.5, 8.0.1, 8.0]

CLC Genomics Server


 [8.5.4, 8.5.3, 8.5.2, 8.5.1, 8.5, 8.0.1, 8.0]

1 Beta v.5

Biomedical Genomics Server Solution


 [7.5.4, 7.5.3, 7.5.2, 7.5.1, 7.5, 7.0.3, 7.0.2, 7.0.1, 7.0]

CLC Genomics Server


 [7.5.4, 7.5.3, 7.5.2, 7.5.1, 7.5, 7.0.3, 7.0.2, 7.0.1, 7.0]

1 Beta v.4

Biomedical Genomics Server Solution


 [6.5.6, 6.5.5, 6.5.4, 6.5.3, 6.5.2, 6.5.1, 6.5]

CLC Genomics Server


 [6.5.6, 6.5.5, 6.5.4, 6.5.3, 6.5.2, 6.5.1, 6.5]

Step 1 - About you

Step 2 - Organizational details

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