Additional Alignments

This plugin allows for use of three additional alignment methods which are otherwise not distributed with CLC workbenches.

Alignment methods

Three different alignment methods are included in this plugin: ClustalW, ClustalO, and Muscle. For more detailed information on each of the alignment methods we encourage you to read the original research papers and the respective websites of the different methods. This paper describes some of the below mentioned algorithms and their strengths [Edgar and Batzoglou, 2006].

 

Method Website Publication Platform
ClustalW More information Thompson et al., 1994 Cross-platform
ClustalO More information Sievers et al., 2011 Cross-platform
Muscle More information Edgar, 2004 Cross-platform

 

When the plugin is installed, you will see the new alignment methods in the Toolbox under Alignments and Trees -> Additional Alignments.

Downloads


Plugin Manual

Download manual

Plugin Downloads

Download plugin

Download Additional Alignments


Version

Platform support

Download

1.6.0

CLC Drug Discovery Workbench


 [3.0]

CLC Genomics Workbench


 [9.5, 9.0.1, 9.0]

CLC Main Workbench


 [7.7.2, 7.7.1, 7.7]

CLC Sequence Viewer


 [7.7.1, 7.7]

1.5.3

CLC Drug Discovery Workbench


 [2.5, 2.4.1, 2.4, 2.0]

CLC Genomics Workbench


 [8.5.3, 8.5.2, 8.5.1, 8.5, 8.0.3, 8.0.2, 8.0.1, 8.0]

CLC Main Workbench


 [7.6.6, 7.6.5, 7.6.4, 7.6.3, 7.6.2, 7.6.1, 7.6]

CLC Sequence Viewer


 [7.6.1, 7.6]

1.5.2

CLC Drug Discovery Workbench


 [1.5.1, 1.5]

CLC Genomics Workbench


 [7.5.5, 7.5.4, 7.5.3, 7.5.2, 7.5.1, 7.5]

CLC Main Workbench


 [7.5.3, 7.5.2, 7.5.1, 7.5]

CLC Sequence Viewer


 [7.5]

1.5.1

CLC Drug Discovery Workbench


 [1.0.2, 1.0.1, 1.0]

CLC Genomics Workbench


 [7.0.4, 7.0.3, 7.0]

CLC Main Workbench


 [7.0.3, 7.0.2, 7.0]

1.5.0

CLC Genomics Workbench


 [6.5.2, 6.5.1]

CLC Main Workbench


 [6.9.2, 6.9.1]

1.4.5

CLC Genomics Workbench


 [6.5]

CLC Main Workbench


 [6.9]

Server plugin Downloads

Download plugin

Download Additional Alignments Server Plugin


Version

Platform support

Download

1.6.0

Biomedical Genomics Server Solution


 [8.5, 8.0.1, 8.0]

CLC Genomics Server


 [8.5, 8.0.1, 8.0]

1.5.3

Biomedical Genomics Server Solution


 [7.5.3, 7.5.2, 7.5.1, 7.5, 7.0.3, 7.0.2, 7.0.1, 7.0]

CLC Genomics Server


 [7.5.3, 7.5.2, 7.5.1, 7.5, 7.0.3, 7.0.2, 7.0.1, 7.0]

1.5.2

Biomedical Genomics Server Solution


 [6.5.6, 6.5.5, 6.5.4, 6.5.3, 6.5.2, 6.5.1, 6.5]

CLC Genomics Server


 [6.5.6, 6.5.5, 6.5.4, 6.5.3, 6.5.2, 6.5.1, 6.5]

1.5.1

Biomedical Genomics Server Solution


 [6.0.5, 6.0.4, 6.0.3, 6.0.2, 6.0]

CLC Genomics Server


 [6.0.5, 6.0.4, 6.0.3, 6.0.2, 6.0]

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