OmicSoft GeneticsLand
Store biobank-scale genome data with GeneticsLand
Harnesses the power of large-scale genetics for biomedical research
Analysis-ready genetic data warehouse
GeneticsLand provides an all-in-one solution for storage, analysis and visualization of genetic data and results, including
- Data integration via allele standardization (genotype, imputed dose, association result, annotation)
- Phenotype data (numeric, factor, survival and longitudinal)
- Multi-level access controls
- Pre-analysis QC and genotype PCA
- HPC/cloud-enabled parallel analytics
- Interactive data and result visualizations
- Hosted public genetic data and associations
Streamlined data stewardship
Leveraging and integrating with QIAGEN’s bioinformatic tools and pipelines, GeneticsLand provides your organization with a centralized system for the management, analysis and visualization of your internal, collaboration and public genotype and phenotype data to:
- Save time and resources in gathering and standardizing data for analysis
- Improve collaboration and enable data re-use
- Provide a distributed research and discovery team with fast access to large cross-study data sets
- Automate parallelization of big analyses
Capabilities
- Biobank-scale fast storage
- Array genotypes (PLINK or VCF)
- Imputed doses (minimac or IMPUTE)
- Sequenced genotypes (VCF)
- Effect allele standardization
- Phenotype data (numeric, factor, survival & longitudinal)
- Multi-level access controls (sample, study, variable)
- Standard exports (VCF or PLINK)
- Pre-analysis QC & genotype PCA
- HPC/cloud-enabled parallel analytics
- Imputation (HAPI-UR/minimac3 or SHAPEIT/IMPUTE2)
- GWAS (linear, logistic, cox)
- Variant annotation (context, frequency, associations, effects)
- SKAT aggregate tests
- Interactive genotype by phenotype visualizations
- Interactive QQ, Manhattan, LocusZoom plots
- Dynamic grouping & filtering
- Pairwise LD
- Germline genotypes & phenotypes from TCGA
- Genetic associations (GRASP & full study results)
